I have cleared all 3 spire zones over the last 2 days, repository and sanctum today and vessel yesterday and was present in killing all nameds. However it is not allowing to click on the items in the Vessel. Is there a problem with waiting a day to go back to vessel after i have cleared the other 2 zones or is this bugged?
Once the reset timer has elapsed, i.e. 6 hours, you can no longer go back and click on them. it's best to do all three zones and immediately go back to get the shinies. Sorry.